ISSN 1003-8280 CN 10-1522/R 中国疾病预防控制中心 主办
Objective To establish a method to accurately identify the species of the female Sarcopha. Methods Thirty five mating pairs of eight Sarcopha species and 57 single male individuals of these 8 species were collected from October 25 in 2011 to October 27 in 2013. Their DNA barcodes were sequenced and 11 DNA barcodes sequences of these 8 species were also downloaded from the GenBank. Males were identified according to their genitalia, DNA barcodes differences between the intra-species, inter-sexes and inter-species were compared. Females were identified according to their mating males and the DNA barcodes, female's signum morphological characteristics of these eight species were illustrated and a key based on it was constructed. Results Inter-sexes DNA barcodes differences were 0-1.37% of these 8 species, and were comparable to the intra-species variations, and were lower than the 2% species limitation. The inter-species DNA barcodes differences were 4.56%-8.81%, there are distinct gaps between the intra-species and inter-species. The signum morphological characteristics were species-specific and could be used to identify the females. Conclusion DNA barcoding is a practical tool to identify the female Sarcopha. Species-specific morphological characters of the female could be developed based on the identification result of DNA barcoding, then provides references for the direct morphological identification of the females.
Objective To identify the unknown fly species with severely damaged morphological characteristics intercepted from Henan port. Methods DNA barcoding based on cytochrome C oxidase subunitⅠ gene was used to amplify and analyze the DNA of the unknown fly species. Results DNA barcoding and sequences analysis showed that the unknown fly species were identified as Chrysomya rufifacies. Conclusion DNA barcoding can partly compensate for the limitations of traditional morphological identification and has broad application prospects in the identification of medical vectors.
Objective To investigate ticks that harbor emerging tick-borne pathogens and co-infection in lava area of Xunke county of Heilongjiang. Methods A total of 257 live ticks were collected in April to June, 2015. All samples were amplified for specific fragments of 6 emerging tick-borne pathogens by PCR, and further identified through gene sequencing. Results The results showed that 86 positive samples of spotted fever group Rickettsia, infection prevalence was 33.46%; Five positive samples of Bartonella, infection prevalence was 1.94%; 11 positive samples of Anaplasma phagocytophilum, infection prevalence was 4.28%; DNA of Borrelia burgdorferi, Babesia, Ehrlichiosis detection results were all negative. It was also found that 8 co-infection samples existed in Dermacentor silvarum, Ixodes persuleatu, and Haemaphysalis concinna, and the infection prevalence was 3.11%. It was confirmed that co-infection of spotted fever group Rickettsia and Bartonella existed in D. silvarum and coinfection of spotted fever group Rickettsia and An. phagocytophilum existed in I. persuleatus and H. concinna. Conclusion To strengthen the prevention and control of vector ticks in lava area of Xunke county of Heilongjiang is warranted.
Objective DNA barcoding based on COⅠ gene was used to identify an unknown rat species captured at Henan port. Methods Genomic DNA of the unknown rat species was extracted, the international primer BatL5310 and R6036R were used to amplify COⅠ gene. Purified PCR product was sequenced and blasted in the GenBank and BOLD Systems v3. Phylogenetic trees were built with Mega 4.1. Results The amplified COⅠ fragment, without primer, of the unknown rat species was 750 bp in size and the sequence was 99.43% identical to the published sequence of Rattus nitidus. The unknown rat species was identified as R. nitidus. Conclusion DNA barcoding is a simple and effective method for the identification of rat species and can be the alternative method of morphological identification.
Objective To understand the distribution of tick-born diseases in Lishui county, Zhejiang province. Methods The ticks on livestocks and wild animals were collected. The infection of tick-born diseases were detected by PCR amplification with specific primers on rickettsia, Ehrlichia chaffeensis, Anaplasma, Bartonella, Lyme disease, and the barber west protozoa. Results The carrying rate of tick on host animals tested in the present study was 17.84%, while the index of tick carrying was 1.25. The positive rates of rickettsia, Ehrlichia chaffeensis, Anaplasma, Bartonella, Lyme disease, and the barber west protozoa were 13.82%, 35.48%, 44.24%, 2.30%, 9.22%, 9.68%, respectively. Conclusion The carrying rate of tick was high in Lishui county, where more than one pathogen existed. The risk on tick?born infection was high, which should be concerned in terms of public health and well being of humans and livestocks.
Objective To determine the species composition and seasonality of mosquitoes in different environments from 2012 to 2014, and to provide the scientific basis for the prevention and control of mosquitoes and mosquito-borne diseases. Methods The adult mosquito surveillance data by light trap method were collected from four districts, then the densities of different environments, months, and years was analyzed. Results From 2012 to 2014, 15 549 mosquitoes were captured and the overall average density was 1.79 mosquitoes per hour. Culex pipiens quinquefasciatus Say was the predominant species, accounted for 83.46%. The annual density peak was observed in July in 2012; duel annual peaks were observed in 2013 (April and September) and 2014 (March and October). In different environments, the density in livestock shed (2.40) was the highest in 2014 while that in farmyard (3.14) in 2013. Conclusion In general, ecological habitats observed in Haikou city, Hainan, China were highly conducive to mosquito proliferation. The predominant species is Cx. pipiens quinquefasciatus. And the livestock shed and the farmyard are the key sites where the main control efforts should be made. The key period of mosquito eradication is from March to October during a year.
Objective To investigate rodent-borne pathogens in volcano lava areas of Xunke county in Heilongjiang, China. Methods A total of 107 rodents were collected during April to September in 2014, and necropsy was conducted to acquire lung, kidney, liver, and kidney and bladder samples. All samples were amplified for the specific fragments of 10 rodent - borne pathogens by PCR, and further identified by gene sequencing. Results Five positive samples of SEO Hantavirus RNA were detected from 107 rodent's lung tissues, infection prevalence was 4.67%; 6 positive samples of leptospirosis DNA were detected from 107 rodent's kidney tissues, infection prevalence was 5.61%; 7 positive samples of Bartonella and 4 positive samples of Anaplasma phagocytophilum were detected from 107 rodent's spleen tissues, the prevalence of infection were 6.54% and 3.74% respectively; Detection of Yersinia pestis, Babesia, Spotted fever group rickettsia, Rickettsia tsutsugamushi, Rickettsia mooseri from rodent's liver and spleen tissues and Borrelia burgdorferi from rodent's Bladder was all negative. Multiple infection was found in some rodents, the infection prevalence was 2.80%. Conclusion Hantavirus, Leptospirosis, Bartonella, Anaplasma phagocytophilum exist in rodent populations that dwell in the volcano lava areas of Xunke county, Heilongjiang, China.
Objective To ensure the purity of template in amplification of barcode DNA from the microtissues of medical vectors and to minimize the morphological damage to specimens, a method of direct PCR without DNA extraction was established.Methods Individuals of mites, fleas, and ticks, as well as the first tarsus of metapodium from flies, were used as samples in this study. The concentration of lysis buffer and the ratio of lysisvs. stop buffer were optimized to determine the reaction conditions.KOD FX DNA polymerase was used instead of Taq DNA polymerase to directly amplify barcode DNA. The PCR product was sequenced and aligned with GenBank sequences using Blast to test whether the sequences were contaminated. Results The optimized lysis buffer was 50 mmol/L NaOH. The optimized ratio of lysisvs. stopbufferwas180μl∶20μl. The optimized reaction system(50μl) was determined as follows: 2×KOD FX DNA polymerase buffer (containing Mg2+) 25μl, 2mmol/LdNTP 10μl , KOD FX DNA polymerase (1U/μl)1 μl, forward primerLCO1490(20μmol/L)1μl, andreverseprimer HCO2198(20μmol/L)1μl. The reaction conditions were optimized as follows: 95℃3 min for pre-heating; 98℃10 s, 50℃30 s, and 68℃1 min for35 cycles, followed by extension 7 min at 68℃. No contamination was found by Blast alignment of amplified sequences.Conclusion The method established in this study is easy to operate, and omission of DNA extraction will save time and expenses. This method is suitable for direct amplification of barcode DNA from mites, fleas, ticks, and even the first tarsus of fly metapodium.
Objective To investigate the species of mosquitoes and mosquito-borne arboviruses in Haikou, Hainan province, China, and to provide a scientific basis for the prevention and control of mosquito-borne diseases. Methods Mosquito samples were collected using electric mosquito traps in Haikou city and other four districts (with different habitats) from June to November in 2010; the mosquito samples were classified in the laboratory, and viruses were isolated from them and then identified. Results A total of 8425 mosquitoes were captured. Of all these mosquitoes, 68.87% were Culex tritaeniorhynchus, 20.21% were Cx. pipiens quinquefasciatus, 6.64% were Anopheles sinensis, and 4.28% were Armigeres subalbatus. One strain of Getah virus and one strain of Banna virus were isolated from the mosquito samples. Conclusion The prevention and control of mosquitoes should be carried out according to the ecological characteristics of mosquitoes in Haikou, so as to effectively prevent mosquito-borne infectious diseases.